Variant report

Variant	rs7901828
Chromosome Location	chr10:55621220-55621221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10763009	0.81[JPT][hapmap]
rs10825120	0.83[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10825130	0.88[CEU][hapmap];0.97[GIH][hapmap]
rs10825132	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs10825133	0.86[EUR][1000 genomes]
rs10825134	0.81[GIH][hapmap]
rs11003886	0.84[GIH][hapmap]
rs12263108	0.88[CEU][hapmap];0.90[GIH][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs12762435	1.00[YRI][hapmap]
rs17707690	1.00[YRI][hapmap]
rs1900443	0.84[GIH][hapmap]
rs4519000	0.83[CEU][hapmap];0.90[GIH][hapmap];0.84[EUR][1000 genomes]
rs6481044	1.00[YRI][hapmap]
rs7914433	0.82[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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