Variant report

Variant	rs10825132
Chromosome Location	chr10:55624063-55624064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10740556	1.00[JPT][hapmap]
rs10763010	1.00[JPT][hapmap]
rs10763011	1.00[JPT][hapmap]
rs10825114	1.00[JPT][hapmap]
rs10825115	1.00[JPT][hapmap]
rs10825117	0.88[ASN][1000 genomes]
rs10825119	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10825123	0.85[JPT][hapmap]
rs10825130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10825133	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10825134	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs11003871	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11003872	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11003873	0.85[JPT][hapmap]
rs11003874	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11003876	1.00[JPT][hapmap]
rs11003879	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12258253	0.81[CEU][hapmap]
rs12263108	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12268247	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs16937793	0.85[JPT][hapmap]
rs1807888	0.83[ASN][1000 genomes]
rs1900415	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1900417	1.00[JPT][hapmap]
rs1900418	1.00[JPT][hapmap]
rs1900419	1.00[JPT][hapmap]
rs1900443	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1900455	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4310525	1.00[JPT][hapmap]
rs4417175	1.00[JPT][hapmap]
rs4417176	1.00[JPT][hapmap]
rs4519000	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4540756	1.00[JPT][hapmap]
rs4935472	1.00[JPT][hapmap]
rs4935473	1.00[JPT][hapmap]
rs4935474	0.85[JPT][hapmap]
rs6481042	1.00[JPT][hapmap]
rs7074365	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7089209	1.00[JPT][hapmap]
rs7358121	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs766868	1.00[JPT][hapmap]
rs7901828	0.87[CEU][hapmap]
rs7914433	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7916446	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55624000-55624600	Enhancers	HUES6 Cell Line	embryonic stem cell

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