Variant report

Variant	rs7914433
Chromosome Location	chr10:55599548-55599549
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	10:55597627-55602376..10:55810019-55812112	H1-hESC	embryonic stem cell:	embryo
2	10:55597627-55602376..10:55882057-55892580	GM12878	blood:
3	10:55597627-55602376..10:55892580-55896204	H1-hESC	embryonic stem cell:	embryo
4	10:55597627-55602376..10:55871238-55872736	GM12878	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10740556	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10763010	1.00[JPT][hapmap]
rs10763011	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10825114	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10825115	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10825117	0.90[ASN][1000 genomes]
rs10825119	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10825120	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10825123	0.85[JPT][hapmap]
rs10825130	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10825132	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10825133	0.91[ASN][1000 genomes]
rs11003868	0.83[CHB][hapmap]
rs11003871	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11003872	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11003873	0.85[JPT][hapmap]
rs11003874	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11003876	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11003879	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12263108	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12268247	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16937793	0.85[JPT][hapmap]
rs1807888	0.85[ASN][1000 genomes]
rs1900415	0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1900417	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1900418	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1900419	1.00[JPT][hapmap]
rs1900443	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1900455	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4310525	1.00[JPT][hapmap]
rs4417175	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4417176	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4519000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4540756	1.00[JPT][hapmap]
rs4935472	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4935473	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4935474	0.85[JPT][hapmap]
rs6481042	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7074365	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7089209	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7358121	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs766868	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7901828	0.82[CEU][hapmap]
rs7916446	0.84[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847684	chr10:55371601-55638740	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55596800-55599800	Weak transcription	Fetal Lung	lung

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