Variant report

Variant	rs2069217
Chromosome Location	chr10:55646762-55646763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10763016	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10825147	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10825148	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10825149	0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs10825154	0.83[JPT][hapmap]
rs10825168	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs11003894	1.00[CEU][hapmap]
rs11003902	0.85[CHB][hapmap]
rs11003908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003909	0.90[AFR][1000 genomes]
rs11003916	1.00[CEU][hapmap]
rs11003920	0.86[YRI][hapmap]
rs11003921	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11003924	0.82[JPT][hapmap]
rs11003925	0.82[JPT][hapmap]
rs11003927	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs12218632	0.93[YRI][hapmap]
rs16937801	1.00[CEU][hapmap]
rs16937813	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16937840	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1900425	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1900426	0.89[CHB][hapmap]
rs1900427	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1911427	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2069215	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2069216	0.99[ASN][1000 genomes]
rs2610846	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs41487044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4287256	0.84[CHB][hapmap]
rs4364970	0.84[CHB][hapmap]
rs4466737	0.84[CHB][hapmap]
rs4478892	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4586053	0.84[CHB][hapmap]
rs7083009	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs73246867	0.89[EUR][1000 genomes]
rs7905665	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7905801	0.95[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55646000-55646800	Enhancers	Fetal Intestine Small	intestine
2	chr10:55646000-55647000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr10:55646200-55647200	Enhancers	HepG2	liver
4	chr10:55646600-55646800	Enhancers	Duodenum Mucosa	Duodenum
5	chr10:55646600-55647000	Flanking Active TSS	Liver	Liver
6	chr10:55646600-55647000	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr10:55646600-55647000	Flanking Active TSS	A549	lung

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