Variant report

Variant	rs2069216
Chromosome Location	chr10:55646825-55646826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10740557	0.84[EUR][1000 genomes]
rs10740558	0.85[EUR][1000 genomes]
rs10740559	0.84[EUR][1000 genomes]
rs10763019	0.85[EUR][1000 genomes]
rs10763020	0.85[EUR][1000 genomes]
rs10763021	0.85[EUR][1000 genomes]
rs10763022	0.85[EUR][1000 genomes]
rs10763024	0.85[EUR][1000 genomes]
rs10763025	0.85[EUR][1000 genomes]
rs10763027	0.85[EUR][1000 genomes]
rs10763028	0.84[EUR][1000 genomes]
rs10825155	0.85[EUR][1000 genomes]
rs10825156	0.85[EUR][1000 genomes]
rs10825157	0.85[EUR][1000 genomes]
rs10825159	0.84[EUR][1000 genomes]
rs10825161	0.83[EUR][1000 genomes]
rs11003908	0.99[ASN][1000 genomes]
rs1900423	0.81[EUR][1000 genomes]
rs1900449	0.84[EUR][1000 genomes]
rs1900450	0.82[EUR][1000 genomes]
rs1900451	0.84[EUR][1000 genomes]
rs2069217	0.99[ASN][1000 genomes]
rs2384332	0.83[EUR][1000 genomes]
rs2384333	0.84[EUR][1000 genomes]
rs2384334	0.81[EUR][1000 genomes]
rs2593103	0.84[EUR][1000 genomes]
rs2593105	0.84[EUR][1000 genomes]
rs2593119	0.85[EUR][1000 genomes]
rs2593120	0.85[EUR][1000 genomes]
rs2593122	0.85[EUR][1000 genomes]
rs2593124	0.84[EUR][1000 genomes]
rs2593129	0.82[EUR][1000 genomes]
rs2593138	0.84[EUR][1000 genomes]
rs2593139	0.84[EUR][1000 genomes]
rs2593140	0.84[EUR][1000 genomes]
rs2610823	0.88[EUR][1000 genomes]
rs2610857	0.84[EUR][1000 genomes]
rs2921924	0.85[EUR][1000 genomes]
rs2926398	0.84[EUR][1000 genomes]
rs2926399	0.83[EUR][1000 genomes]
rs41487044	0.99[ASN][1000 genomes]
rs4427480	0.84[EUR][1000 genomes]
rs7089258	0.83[EUR][1000 genomes]
rs7089762	0.82[EUR][1000 genomes]
rs7095839	0.84[EUR][1000 genomes]
rs7910658	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55646000-55647000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr10:55646200-55647200	Enhancers	HepG2	liver
3	chr10:55646600-55647000	Flanking Active TSS	Liver	Liver
4	chr10:55646600-55647000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr10:55646600-55647000	Flanking Active TSS	A549	lung
6	chr10:55646800-55647000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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