Variant report

Variant	rs11003916
Chromosome Location	chr10:55650469-55650470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10825123	0.83[GIH][hapmap];0.86[MEX][hapmap]
rs10825168	0.94[GIH][hapmap]
rs11003873	0.83[GIH][hapmap]
rs11003894	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs11003908	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs11003921	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11003927	0.94[GIH][hapmap]
rs12572470	0.84[GIH][hapmap]
rs16937793	0.88[GIH][hapmap];0.86[MEX][hapmap]
rs16937801	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs16937813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1900421	0.85[JPT][hapmap]
rs1900444	0.85[JPT][hapmap]
rs1900458	0.85[JPT][hapmap]
rs1911429	0.85[JPT][hapmap]
rs1911430	0.85[JPT][hapmap]
rs2069215	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2069217	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2121525	0.85[JPT][hapmap]
rs2446608	1.00[JPT][hapmap]
rs2593107	0.85[JPT][hapmap]
rs2593135	0.85[JPT][hapmap]
rs2593136	0.85[JPT][hapmap]
rs2610899	0.85[JPT][hapmap]
rs2610902	0.85[JPT][hapmap]
rs2660172	0.85[JPT][hapmap]
rs2660183	0.85[JPT][hapmap]
rs2660184	0.85[JPT][hapmap]
rs2660186	0.85[JPT][hapmap]
rs2660190	0.85[JPT][hapmap]
rs41487044	1.00[EUR][1000 genomes]
rs4376818	0.92[CHB][hapmap]
rs4478893	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7097365	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs73246867	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842975	chr10:55378668-55736655	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895429	chr10:55564355-55736655	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv550947	chr10:55634290-55662226	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1049442	chr10:55638740-55681002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv895430	chr10:55645953-55736655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links