Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10825168	1.00[CEU][hapmap]
rs11003927	1.00[CEU][hapmap]
rs11003964	1.00[CEU][hapmap]
rs11003968	0.95[GIH][hapmap]
rs11003977	0.95[GIH][hapmap]
rs11003996	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11003999	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs11004000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12572470	0.84[GIH][hapmap]
rs16937840	1.00[CEU][hapmap]
rs2135724	1.00[JPT][hapmap]
rs2253198	1.00[CEU][hapmap]
rs2253647	1.00[CEU][hapmap]
rs2253882	1.00[JPT][hapmap]
rs2610846	1.00[CEU][hapmap]
rs2610875	1.00[GIH][hapmap];0.88[TSI][hapmap]
rs2610891	0.95[GIH][hapmap]
rs2610895	0.93[JPT][hapmap]
rs2610896	0.92[JPT][hapmap]
rs2660147	0.84[EUR][1000 genomes]
rs2660148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2660180	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs2660181	0.93[JPT][hapmap]
rs2926403	1.00[JPT][hapmap]
rs2939929	0.93[JPT][hapmap]
rs9651342	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1052939	chr10:55654719-55769239	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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