Variant report

Variant	rs11004581
Chromosome Location	chr10:56554529-56554530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10740592	0.86[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap]
rs10763124	0.91[YRI][hapmap]
rs10763127	0.83[CHD][hapmap];0.80[GIH][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap]
rs10763132	0.91[CHD][hapmap];0.83[GIH][hapmap];0.90[TSI][hapmap]
rs10825373	0.81[CHD][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap]
rs10825387	0.86[CHD][hapmap];0.87[GIH][hapmap];0.90[TSI][hapmap]
rs11004557	0.81[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs1336201	0.84[YRI][hapmap]
rs1414691	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs16906522	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1855904	0.80[GIH][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.84[YRI][hapmap]
rs1912985	0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs1932603	0.84[YRI][hapmap]
rs2050545	0.88[CHD][hapmap];0.87[GIH][hapmap];0.90[TSI][hapmap]
rs2050546	0.90[YRI][hapmap]
rs2050547	0.84[YRI][hapmap]
rs2065842	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs4570495	0.90[JPT][hapmap]
rs61854140	0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7068489	0.84[CHD][hapmap];0.82[GIH][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap]
rs7918419	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs955846	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050405	chr10:56224676-56800009	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540635	chr10:56224676-56800009	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv933410	chr10:56319433-56713977	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1043144	chr10:56332903-56680265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv550970	chr10:56361499-56764751	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	esv2758221	chr10:56408027-56566137	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2759754	chr10:56408027-56566137	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv895447	chr10:56428277-56587755	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv526545	chr10:56462471-56554972	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv895449	chr10:56503477-56606168	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv895450	chr10:56504373-56587755	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv895451	chr10:56504373-56606168	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv895452	chr10:56508400-56700597	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv895453	chr10:56512887-56569551	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1047184	chr10:56516350-56996193	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv895454	chr10:56526799-56616917	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv550985	chr10:56546055-56579376	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
18	nsv971920	chr10:56548526-56565969	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
19	nsv467230	chr10:56550427-56599297	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv550986	chr10:56550427-56599297	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv550987	chr10:56554529-56589230	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
22	nsv467231	chr10:56554529-56599297	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56553200-56556800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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