Variant report

Variant	rs2050545
Chromosome Location	chr10:56503477-56503478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10740592	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs10763124	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10763127	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs10763132	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10825373	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10825374	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10825387	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11004534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11004557	0.93[ASW][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap];0.90[LWK][hapmap];0.89[MKK][hapmap];0.94[YRI][hapmap]
rs11004581	0.88[CHD][hapmap];0.87[GIH][hapmap];0.90[TSI][hapmap]
rs1336193	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1336200	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1336201	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1591533	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs16906522	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1832186	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1855904	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1912985	0.86[CHD][hapmap]
rs1932599	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1932603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1954616	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs2050546	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs2050547	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs2065842	0.83[CHB][hapmap]
rs2384523	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4570495	0.95[CHB][hapmap];0.85[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4935538	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs59241461	0.82[ASN][1000 genomes]
rs61854140	0.80[EUR][1000 genomes]
rs7068489	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs7091341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7909226	0.95[ASN][1000 genomes]
rs7916693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7918419	0.91[CHB][hapmap];0.85[JPT][hapmap];0.94[YRI][hapmap]
rs7920655	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050405	chr10:56224676-56800009	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540635	chr10:56224676-56800009	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv933410	chr10:56319433-56713977	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1043144	chr10:56332903-56680265	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv550970	chr10:56361499-56764751	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	esv2758221	chr10:56408027-56566137	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2759754	chr10:56408027-56566137	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv895447	chr10:56428277-56587755	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1829325	chr10:56442061-56514009	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv895448	chr10:56456576-56526747	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv526545	chr10:56462471-56554972	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv14427	chr10:56469623-56503557	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1053651	chr10:56478151-56545395	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv948014	chr10:56502936-56504940	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv895449	chr10:56503477-56606168	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56503200-56504200	Enhancers	Fetal Lung	lung

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