Variant report

Variant	rs11005701
Chromosome Location	chr10:58982424-58982425
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11005687	0.81[AMR][1000 genomes]
rs11005689	0.86[ASN][1000 genomes]
rs11005702	1.00[ASN][1000 genomes]
rs2393225	0.91[ASN][1000 genomes]
rs3107511	0.81[AMR][1000 genomes]
rs34563799	0.92[ASN][1000 genomes]
rs7085570	0.91[ASN][1000 genomes]
rs7920288	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756345	chr10:58846594-59027194	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv895528	chr10:58853784-58991581	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv551117	chr10:58938552-59007742	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv895543	chr10:58938552-59210800	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv895544	chr10:58938552-59282980	Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	nsv895545	chr10:58938552-59313872	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv916857	chr10:58960110-59272160	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58979200-58983000	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:58980400-58982800	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr10:58980600-58982800	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr10:58980800-58982800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:58980800-58983000	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr10:58981000-58982600	Active TSS	H1 Cell Line	embryonic stem cell
7	chr10:58981200-58982600	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr10:58981400-58982600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr10:58981600-58982600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr10:58982000-58982600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:58982000-58982600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:58982000-58982600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:58982200-58982800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:58982400-58982800	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr10:58982400-58983000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:58982400-58984400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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