Variant report

Variant	rs11006804
Chromosome Location	chr10:28327062-28327063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10508729	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11006808	0.83[ASN][1000 genomes]
rs11006811	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12241297	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12244891	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12246891	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12249305	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12255657	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12266822	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12268684	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12268764	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17831032	0.84[JPT][hapmap]
rs1937806	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2253165	0.87[ASN][1000 genomes]
rs2368290	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3780856	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3780857	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3780858	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3802518	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3802522	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6481498	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs74127187	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903206	1.00[JPT][hapmap]
rs7919932	0.90[JPT][hapmap]
rs7921547	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052182	chr10:28259142-28361830	Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28326800-28327200	Enhancers	Fetal Stomach	stomach
2	chr10:28327000-28327200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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