Variant report

Variant	rs2368290
Chromosome Location	chr10:28336097-28336098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28317069..28320040-chr10:28334616..28337378,2	MCF-7	breast:
2	chr10:28332388..28334708-chr10:28335974..28338490,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10508729	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10508730	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs11006804	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11006808	0.89[ASN][1000 genomes]
rs11006811	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12241297	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12244891	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12246891	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12249305	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12255657	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12266822	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12268684	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12268764	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12412297	0.82[ASN][1000 genomes]
rs17831032	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1937806	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2253165	0.93[ASN][1000 genomes]
rs3780856	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3780857	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3780858	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3802518	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3802522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58270577	0.82[ASN][1000 genomes]
rs6481498	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73606064	0.82[ASN][1000 genomes]
rs74127187	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7903206	1.00[JPT][hapmap]
rs7919932	0.91[JPT][hapmap]
rs7921547	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052182	chr10:28259142-28361830	Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv522191	chr10:28329684-28337278	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28330000-28345000	Weak transcription	Pancreas	Pancrea
2	chr10:28331200-28345000	Weak transcription	Aorta	Aorta
3	chr10:28334200-28341200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:28334800-28341800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:28335000-28345800	Weak transcription	Brain Angular Gyrus	brain
6	chr10:28335400-28336400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:28335400-28336600	Enhancers	Osteobl	bone
8	chr10:28335600-28336200	Weak transcription	HSMMtube	muscle
9	chr10:28335600-28345000	Weak transcription	Fetal Stomach	stomach
10	chr10:28335800-28336400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links