Variant report

Variant	rs11006842
Chromosome Location	chr10:28363867-28363868
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28362265..28365237-chr10:28365253..28367161,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11006819	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006828	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006829	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006831	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006848	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006856	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006860	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006864	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006872	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801823	1.00[ASN][1000 genomes]
rs72801882	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801897	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801902	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72803614	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv894988	chr10:28337570-28410989	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv466855	chr10:28341783-28400835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
8	nsv550284	chr10:28341783-28400835	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28341200-28377600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:28344600-28364400	Weak transcription	Fetal Heart	heart
3	chr10:28346200-28375400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:28346600-28364400	Weak transcription	HepG2	liver
5	chr10:28347000-28364000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:28347000-28364000	Weak transcription	Pancreas	Pancrea
7	chr10:28347000-28364200	Weak transcription	Esophagus	oesophagus
8	chr10:28347000-28364600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:28347000-28375200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:28347000-28380400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:28347000-28381000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:28347000-28412200	Weak transcription	Left Ventricle	heart
13	chr10:28347000-28414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:28347200-28364000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:28347400-28364200	Weak transcription	Fetal Intestine Large	intestine
16	chr10:28347400-28374600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:28347400-28377000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:28347400-28377200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:28347600-28364200	Weak transcription	Primary B cells from cord blood	blood
20	chr10:28348000-28381200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:28348200-28364200	Weak transcription	Fetal Intestine Small	intestine
22	chr10:28348200-28365200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:28349400-28376600	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:28349600-28364200	Weak transcription	HSMM	muscle
25	chr10:28349800-28364200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:28349800-28364400	Weak transcription	Gastric	stomach
27	chr10:28355600-28364000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr10:28356000-28364000	Weak transcription	HSMMtube	muscle
29	chr10:28356000-28364200	Weak transcription	Adipose Nuclei	Adipose
30	chr10:28356200-28364000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:28356200-28364000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:28356200-28364400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:28356200-28366200	Weak transcription	Brain Angular Gyrus	brain
34	chr10:28356600-28364200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr10:28356800-28364200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:28357200-28380200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:28357800-28367200	Strong transcription	Primary T cells from cord blood	blood
38	chr10:28358000-28366000	Weak transcription	Psoas Muscle	Psoas
39	chr10:28358800-28366800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:28360200-28364000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:28360200-28364400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr10:28360400-28364400	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr10:28360800-28366400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr10:28361000-28364200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr10:28361600-28364200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:28361800-28364200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:28362200-28364200	Weak transcription	Aorta	Aorta
48	chr10:28362200-28364400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:28362400-28366400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:28363000-28364400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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