Variant report

Variant	rs11006859
Chromosome Location	chr10:28384965-28384966
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28384110..28385653-chr10:28390069..28392151,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12249260	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv894988	chr10:28337570-28410989	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv466855	chr10:28341783-28400835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
8	nsv550284	chr10:28341783-28400835	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv1817535	chr10:28373644-28409054	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1848511	chr10:28373644-28464753	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv1851923	chr10:28384098-28410989	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv894989	chr10:28384098-28449974	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28347000-28412200	Weak transcription	Left Ventricle	heart
2	chr10:28347000-28414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:28364800-28392000	Weak transcription	Gastric	stomach
4	chr10:28364800-28416600	Weak transcription	Pancreas	Pancrea
5	chr10:28367800-28420200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:28376000-28438400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:28376600-28416600	Weak transcription	Fetal Intestine Large	intestine
8	chr10:28376800-28392000	Weak transcription	Esophagus	oesophagus
9	chr10:28377800-28388200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:28378000-28418400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:28378400-28386400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:28378600-28396200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:28378600-28400800	Weak transcription	HSMM	muscle
14	chr10:28378600-28407400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:28378600-28412800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:28378600-28425600	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:28378800-28396400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:28378800-28407400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:28378800-28408400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:28379000-28407000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:28379200-28386000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:28379200-28391800	Weak transcription	Aorta	Aorta
23	chr10:28379200-28394800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr10:28379200-28395600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:28379200-28406600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr10:28379200-28416600	Weak transcription	Fetal Intestine Small	intestine
27	chr10:28379800-28407800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr10:28380000-28396000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:28380000-28398400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:28383600-28391600	Weak transcription	Primary T cells from cord blood	blood
31	chr10:28383600-28394800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr10:28384400-28385000	Active TSS	Muscle Satellite Cultured Cells	--
33	chr10:28384400-28385200	Flanking Active TSS	HUVEC	blood vessel
34	chr10:28384400-28385400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:28384600-28385000	Active TSS	NHDF-Ad	bronchial
36	chr10:28384800-28385000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:28384800-28385000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links