Variant report

Variant	rs11012374
Chromosome Location	chr10:18340232-18340233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11012395	0.97[AFR][1000 genomes]
rs12269078	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13377126	0.98[AFR][1000 genomes]
rs16916821	0.85[ASN][1000 genomes]
rs2357784	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2357785	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4748439	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7075087	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18331600-18348800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:18339600-18344600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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