Variant report

Variant	rs12269078
Chromosome Location	chr10:18344860-18344861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11012374	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12244407	1.00[YRI][hapmap]
rs12250111	0.96[AFR][1000 genomes]
rs12265106	0.94[AFR][1000 genomes]
rs12265986	0.88[AFR][1000 genomes]
rs16916821	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2357784	1.00[ASN][1000 genomes]
rs2357785	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4570473	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs4748439	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919054	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18331600-18348800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:18344600-18345000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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