Variant report

Variant	rs12265106
Chromosome Location	chr10:18334878-18334879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11012802	1.00[AMR][1000 genomes]
rs11013025	1.00[AMR][1000 genomes]
rs12244407	1.00[YRI][hapmap]
rs12246864	1.00[AMR][1000 genomes]
rs12250111	0.97[AFR][1000 genomes]
rs12256445	1.00[AMR][1000 genomes]
rs12260198	1.00[AMR][1000 genomes]
rs12265986	0.95[AFR][1000 genomes]
rs12269078	0.94[AFR][1000 genomes]
rs4570473	0.90[YRI][hapmap]
rs58959310	1.00[AMR][1000 genomes]
rs7919054	1.00[YRI][hapmap]
rs7923851	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv894914	chr10:18301221-18335200	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18331200-18335200	Enhancers	NH-A	brain
2	chr10:18331400-18335200	Enhancers	Osteobl	bone
3	chr10:18331600-18348800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:18333200-18335000	Enhancers	Hela-S3	cervix
5	chr10:18333400-18335200	Enhancers	NHLF	lung
6	chr10:18333400-18335600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:18333600-18337000	Weak transcription	Aorta	Aorta
8	chr10:18334000-18335000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:18334000-18335000	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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