Variant report

Variant	rs58959310
Chromosome Location	chr10:18365342-18365343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11012802	1.00[AMR][1000 genomes]
rs11013025	1.00[AMR][1000 genomes]
rs12240372	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12246864	1.00[AMR][1000 genomes]
rs12256445	1.00[AMR][1000 genomes]
rs12259814	1.00[EUR][1000 genomes]
rs12260198	1.00[AMR][1000 genomes]
rs12262212	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12265106	1.00[AMR][1000 genomes]
rs6482178	1.00[EUR][1000 genomes]
rs7085228	1.00[EUR][1000 genomes]
rs73607821	1.00[EUR][1000 genomes]
rs7893583	1.00[AMR][1000 genomes]
rs7893974	1.00[EUR][1000 genomes]
rs7907556	1.00[EUR][1000 genomes]
rs7923851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18363000-18368000	Weak transcription	Fetal Heart	heart
2	chr10:18365000-18368200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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