Variant report

Variant	rs6482178
Chromosome Location	chr10:18385393-18385394
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12240372	1.00[EUR][1000 genomes]
rs12259814	1.00[EUR][1000 genomes]
rs12262212	1.00[EUR][1000 genomes]
rs58959310	1.00[EUR][1000 genomes]
rs7085228	1.00[EUR][1000 genomes]
rs73607821	1.00[EUR][1000 genomes]
rs7893974	1.00[EUR][1000 genomes]
rs7907556	1.00[EUR][1000 genomes]
rs7923851	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv550040	chr10:18365380-18399519	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1045547	chr10:18366749-18397247	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv818749	chr10:18377343-18392126	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv14927	chr10:18378907-18402738	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1413301	chr10:18385394-18385395	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18383000-18387200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:18383600-18387000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:18384600-18385800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:18384600-18386200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:18384800-18385800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:18384800-18386600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:18384800-18387200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:18385000-18387000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:18385200-18385600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:18385200-18386000	Enhancers	Right Ventricle	heart
11	chr10:18385200-18386600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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