Variant report

Variant	nsv1045547
Chromosome Location	chr10:18366749-18397247
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:18371118..18373619-chr10:18379416..18382844,3	K562	blood:
2	chr10:18380812..18382353-chr10:18384602..18387470,2	MCF-7	breast:
3	chr10:18380812..18382353-chr10:18384602..18387470,2	MCF-7	breast:
4	chr10:17649692..17651543-chr10:18392877..18394730,2	K562	blood:
5	chr10:18371118..18373619-chr10:18379416..18382844,3	K562	blood:
6	chr10:18392878..18393854-chr10:18503287..18504544,6	MCF-7	breast:

Extended variants
information (count: 1001 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:1001 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576501913	chr10:18366767-18366768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs544421679	chr10:18366784-18366785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs113687921	chr10:18366793-18366794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs552899167	chr10:18366814-18366815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs564709403	chr10:18366844-18366845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs530042205	chr10:18366846-18366847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs188718932	chr10:18366862-18366863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs115239076	chr10:18366894-18366895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs16916829	chr10:18366948-18366949	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs148606512	chr10:18366957-18366958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs547779331	chr10:18366984-18366985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs143000994	chr10:18367016-18367017	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs533882462	chr10:18367068-18367069	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs577201389	chr10:18367110-18367111	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs146633792	chr10:18367111-18367112	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs141388287	chr10:18367151-18367152	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs111782601	chr10:18367153-18367154	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs556049965	chr10:18367164-18367165	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs574483705	chr10:18367179-18367180	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs7083885	chr10:18367182-18367183	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs200804725	chr10:18367217-18367218	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs560234423	chr10:18367220-18367221	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs146838973	chr10:18367221-18367222	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs546552118	chr10:18367228-18367229	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs369353519	chr10:18367235-18367236	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs73591728	chr10:18367265-18367266	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs185399729	chr10:18367273-18367274	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs2497818	chr10:18367338-18367339	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs80060858	chr10:18367406-18367407	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs76698573	chr10:18367408-18367409	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs398012935	chr10:18367421-18367422	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs529392850	chr10:18367422-18367423	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs547572664	chr10:18367444-18367445	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs190896598	chr10:18367522-18367523	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs376896406	chr10:18367543-18367544	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs375133266	chr10:18367553-18367554	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs17602947	chr10:18367576-18367577	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs115102470	chr10:18367600-18367601	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs570427408	chr10:18367615-18367616	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs537708507	chr10:18367633-18367634	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs370798195	chr10:18367676-18367677	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs2497819	chr10:18367847-18367848	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs375587314	chr10:18367873-18367874	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs180803651	chr10:18367900-18367901	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs535574177	chr10:18367957-18367958	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs73591729	chr10:18368007-18368008	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs572096763	chr10:18368018-18368019	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs545838099	chr10:18368038-18368039	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs79967544	chr10:18368095-18368096	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs77499339	chr10:18368104-18368105	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	19287155	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18363000-18368000	Weak transcription	Fetal Heart	heart
2	chr10:18365000-18368200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:18365800-18367200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:18367000-18370000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:18367200-18368400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:18367200-18368800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:18367200-18369000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr10:18367400-18368800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:18367400-18369600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:18368000-18369600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:18368000-18370000	Enhancers	Fetal Heart	heart
12	chr10:18368200-18369000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr10:18368200-18369600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:18368400-18369000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:18368400-18369000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:18368400-18369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:18368400-18369000	Enhancers	Fetal Stomach	stomach
18	chr10:18368400-18369000	Enhancers	NHDF-Ad	bronchial
19	chr10:18368400-18370000	Enhancers	Brain Substantia Nigra	brain
20	chr10:18368600-18368800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr10:18368600-18369000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:18368600-18369000	Enhancers	Fetal Lung	lung
23	chr10:18368600-18369600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:18368600-18369800	Enhancers	Brain Angular Gyrus	brain
25	chr10:18368600-18369800	Enhancers	Brain Cingulate Gyrus	brain
26	chr10:18368800-18369400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:18368800-18370200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:18368800-18370400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:18369000-18371600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:18369000-18374400	Weak transcription	Fetal Lung	lung
31	chr10:18369000-18374600	Weak transcription	Fetal Stomach	stomach
32	chr10:18369400-18369600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr10:18369600-18370200	Enhancers	Brain Anterior Caudate	brain
34	chr10:18369800-18372200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:18370000-18371200	Weak transcription	Fetal Heart	heart
36	chr10:18370200-18372400	Weak transcription	Brain Anterior Caudate	brain
37	chr10:18371200-18372200	Enhancers	Fetal Heart	heart
38	chr10:18371600-18372200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:18371800-18372000	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
40	chr10:18372000-18372200	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
41	chr10:18372200-18372400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:18372400-18372600	Enhancers	Brain Anterior Caudate	brain
43	chr10:18374400-18377200	Enhancers	Fetal Lung	lung
44	chr10:18374600-18376200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:18374600-18377400	Enhancers	Fetal Stomach	stomach
46	chr10:18374800-18376600	Enhancers	Ovary	ovary
47	chr10:18375000-18376000	Enhancers	Rectal Smooth Muscle	rectum
48	chr10:18375000-18377400	Enhancers	Colon Smooth Muscle	Colon
49	chr10:18375800-18377000	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr10:18376000-18376800	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links