Variant report

Variant	rs2497819
Chromosome Location	chr10:18367847-18367848
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12255303	0.83[EUR][1000 genomes]
rs2488152	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2488156	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2488157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488159	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497800	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497804	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497808	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497809	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497810	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497812	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497813	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2497814	0.94[ASN][1000 genomes]
rs2497818	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497822	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv550040	chr10:18365380-18399519	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1045547	chr10:18366749-18397247	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18363000-18368000	Weak transcription	Fetal Heart	heart
2	chr10:18365000-18368200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:18367000-18370000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:18367200-18368400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:18367200-18368800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:18367200-18369000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr10:18367400-18368800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:18367400-18369600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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