Variant report

Variant	rs2488157
Chromosome Location	chr10:18368908-18368909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12255303	0.84[EUR][1000 genomes]
rs2488152	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2488156	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2488159	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497800	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497804	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497808	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497809	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497810	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497812	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497813	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2497814	0.94[ASN][1000 genomes]
rs2497818	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2497819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497822	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv550040	chr10:18365380-18399519	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1045547	chr10:18366749-18397247	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18367000-18370000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:18367200-18369000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr10:18367400-18369600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:18368000-18369600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:18368000-18370000	Enhancers	Fetal Heart	heart
6	chr10:18368200-18369000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:18368200-18369600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:18368400-18369000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:18368400-18369000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr10:18368400-18369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:18368400-18369000	Enhancers	Fetal Stomach	stomach
12	chr10:18368400-18369000	Enhancers	NHDF-Ad	bronchial
13	chr10:18368400-18370000	Enhancers	Brain Substantia Nigra	brain
14	chr10:18368600-18369000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:18368600-18369000	Enhancers	Fetal Lung	lung
16	chr10:18368600-18369600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:18368600-18369800	Enhancers	Brain Angular Gyrus	brain
18	chr10:18368600-18369800	Enhancers	Brain Cingulate Gyrus	brain
19	chr10:18368800-18369400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:18368800-18370200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:18368800-18370400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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