Variant report

Variant	rs17602947
Chromosome Location	chr10:18367576-18367577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11012876	1.00[CHB][hapmap]
rs11599858	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16916912	1.00[CHB][hapmap]
rs16916914	1.00[CHB][hapmap]
rs16916916	1.00[CHB][hapmap]
rs17604757	1.00[CHB][hapmap]
rs17661090	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17681709	1.00[CHB][hapmap]
rs35822349	0.89[ASN][1000 genomes]
rs41494451	1.00[CHB][hapmap]
rs4601659	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56392041	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7076486	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7079408	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7083207	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7086141	1.00[JPT][hapmap]
rs7902948	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7903081	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550039	chr10:18363924-18425519	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv550040	chr10:18365380-18399519	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1045547	chr10:18366749-18397247	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18363000-18368000	Weak transcription	Fetal Heart	heart
2	chr10:18365000-18368200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:18367000-18370000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:18367200-18368400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:18367200-18368800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:18367200-18369000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr10:18367400-18368800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:18367400-18369600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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