Variant report

Variant	rs17681709
Chromosome Location	chr10:18542339-18542340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10828276	1.00[ASN][1000 genomes]
rs11012876	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16916912	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16916914	1.00[CHB][hapmap]
rs16916916	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17604757	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17682059	0.94[CEU][hapmap]
rs17682394	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1929423	1.00[ASN][1000 genomes]
rs41494451	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs56278429	0.83[EUR][1000 genomes]
rs61844245	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61844246	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17681709	SUV39H2	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18523000-18549400	Weak transcription	Pancreas	Pancrea
2	chr10:18527000-18548800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:18530000-18545200	Weak transcription	Fetal Lung	lung
4	chr10:18530200-18543600	Weak transcription	Ovary	ovary
5	chr10:18536400-18548800	Weak transcription	Fetal Heart	heart
6	chr10:18540600-18543400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18541200-18542600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:18541400-18549200	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:18542000-18549400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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