Variant report

Variant	rs16916916
Chromosome Location	chr10:18458707-18458708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10828276	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012800	0.88[EUR][1000 genomes]
rs11012838	0.91[YRI][hapmap]
rs11012839	0.84[YRI][hapmap]
rs11012876	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360277	0.85[EUR][1000 genomes]
rs16916912	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916914	1.00[CHB][hapmap];0.82[TSI][hapmap]
rs17604757	1.00[CHB][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17681709	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1929423	1.00[ASN][1000 genomes]
rs41494451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55890801	0.85[AFR][1000 genomes]
rs61844175	0.83[AFR][1000 genomes]
rs7090405	0.83[AFR][1000 genomes]
rs7906351	0.86[EUR][1000 genomes]
rs7915409	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522505	chr10:18453209-18465479	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16916916	FABP4	trans	brain	seeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:18443800-18459000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18444600-18466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:18448400-18469000	Weak transcription	Right Ventricle	heart
6	chr10:18452800-18466600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:18453000-18459600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:18453800-18465000	Weak transcription	Fetal Heart	heart
9	chr10:18454600-18459000	Weak transcription	Left Ventricle	heart
10	chr10:18454600-18462200	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:18454600-18467000	Weak transcription	Fetal Lung	lung
12	chr10:18454600-18467200	Weak transcription	Fetal Stomach	stomach
13	chr10:18454600-18467600	Weak transcription	Aorta	Aorta
14	chr10:18454600-18469000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:18454800-18460600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:18454800-18461400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:18454800-18465800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:18454800-18466800	Weak transcription	Brain Anterior Caudate	brain
19	chr10:18456800-18466800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:18457600-18467600	Weak transcription	Ovary	ovary
21	chr10:18458400-18459000	Strong transcription	Primary hematopoietic stem cells	blood
22	chr10:18458400-18459000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:18458600-18459200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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