Variant report

Variant	rs11012839
Chromosome Location	chr10:18448338-18448339
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18440418..18442288-chr10:18448031..18451396,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10828275	0.93[EUR][1000 genomes]
rs11012828	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11012829	0.88[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11012830	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11012832	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11012833	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11012838	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012864	0.86[EUR][1000 genomes]
rs11012867	0.83[EUR][1000 genomes]
rs11594496	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12247369	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs16916912	0.88[YRI][hapmap]
rs16916916	0.84[YRI][hapmap]
rs1929421	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35653909	0.92[EUR][1000 genomes]
rs55890801	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61545603	0.92[ASN][1000 genomes]
rs61842427	0.86[ASN][1000 genomes]
rs61842428	0.82[ASN][1000 genomes]
rs61842438	0.92[ASN][1000 genomes]
rs61844175	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7090405	0.89[EUR][1000 genomes]
rs74120238	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054616	chr10:18433954-18451969	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:18435000-18454200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:18443800-18459000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:18444600-18451200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:18444600-18456000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:18444600-18457000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:18444600-18458400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:18444600-18466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:18444800-18451200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:18446200-18448600	Enhancers	Osteobl	bone
12	chr10:18446400-18448600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:18446400-18448800	Enhancers	HSMM	muscle
14	chr10:18446800-18448400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:18446800-18448400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr10:18447000-18448600	Enhancers	NH-A	brain
17	chr10:18447200-18449000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:18447200-18449000	Enhancers	Fetal Heart	heart
19	chr10:18447600-18448600	Flanking Active TSS	Colon Smooth Muscle	Colon
20	chr10:18447800-18448400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr10:18447800-18448400	Enhancers	Adipose Nuclei	Adipose
22	chr10:18447800-18448400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:18447800-18448400	Enhancers	Fetal Muscle Leg	muscle
24	chr10:18447800-18448600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:18447800-18448600	Flanking Active TSS	Fetal Lung	lung
26	chr10:18447800-18448600	Enhancers	Ovary	ovary
27	chr10:18447800-18448800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:18447800-18448800	Enhancers	Fetal Stomach	stomach
29	chr10:18447800-18448800	Active TSS	Stomach Smooth Muscle	stomach
30	chr10:18447800-18448800	Flanking Active TSS	Hela-S3	cervix
31	chr10:18447800-18448800	Flanking Active TSS	NHLF	lung
32	chr10:18448000-18448400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:18448000-18448400	Active TSS	Fetal Brain Female	brain
34	chr10:18448000-18448400	Enhancers	Pancreas	Pancrea
35	chr10:18448000-18448400	Active TSS	Rectal Smooth Muscle	rectum
36	chr10:18448000-18448400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:18448000-18448600	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr10:18448000-18448600	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr10:18448000-18448800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:18448000-18450800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:18448200-18448400	Enhancers	Left Ventricle	heart
42	chr10:18448200-18448400	Enhancers	Right Ventricle	heart
43	chr10:18448200-18448400	Active TSS	NHDF-Ad	bronchial
44	chr10:18448200-18448600	Enhancers	Aorta	Aorta
45	chr10:18448200-18448600	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr10:18448200-18448600	Flanking Active TSS	Fetal Brain Male	brain
47	chr10:18448200-18448600	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr10:18448200-18453400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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