Variant report

Variant	rs10828275
Chromosome Location	chr10:18443432-18443433
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11012828	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11012829	0.97[EUR][1000 genomes]
rs11012830	0.97[EUR][1000 genomes]
rs11012832	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11012833	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11012838	0.96[EUR][1000 genomes]
rs11012839	0.93[EUR][1000 genomes]
rs11012864	0.84[EUR][1000 genomes]
rs11012867	0.81[EUR][1000 genomes]
rs11594496	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11594555	0.94[AFR][1000 genomes]
rs1929421	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35653909	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55890801	0.93[EUR][1000 genomes]
rs61844175	0.92[EUR][1000 genomes]
rs7090405	0.88[EUR][1000 genomes]
rs74120238	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054616	chr10:18433954-18451969	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18430600-18446400	Weak transcription	Brain Angular Gyrus	brain
2	chr10:18431200-18447800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:18431200-18447800	Weak transcription	Fetal Intestine Large	intestine
4	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:18432600-18446800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:18432600-18448000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:18434200-18444000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:18434200-18448000	Weak transcription	Pancreas	Pancrea
9	chr10:18435000-18454200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:18435200-18444000	Weak transcription	Fetal Heart	heart
12	chr10:18435400-18443800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:18436000-18448200	Weak transcription	Left Ventricle	heart
14	chr10:18440200-18444600	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:18440800-18446800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:18440800-18447000	Weak transcription	Fetal Brain Female	brain
17	chr10:18441000-18444200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:18441200-18445800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:18441200-18446800	Weak transcription	Aorta	Aorta
20	chr10:18441400-18445400	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:18441600-18444200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:18441600-18446400	Weak transcription	Fetal Brain Male	brain
23	chr10:18441600-18447800	Weak transcription	Fetal Stomach	stomach
24	chr10:18441600-18447800	Weak transcription	Ovary	ovary
25	chr10:18441800-18448200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:18442400-18444000	Weak transcription	Fetal Lung	lung
27	chr10:18442800-18444000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:18443400-18443800	Strong transcription	Fetal Intestine Small	intestine
29	chr10:18443400-18444000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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