Variant report

Variant	rs11012833
Chromosome Location	chr10:18445599-18445600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10828275	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11012828	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11012829	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11012830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11012832	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11012838	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11012839	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11012864	0.84[EUR][1000 genomes]
rs11012867	0.81[EUR][1000 genomes]
rs11594496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12247369	0.80[CHB][hapmap]
rs1929421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35653909	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55890801	0.93[EUR][1000 genomes]
rs61844175	0.92[EUR][1000 genomes]
rs7090405	0.88[EUR][1000 genomes]
rs74120238	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054616	chr10:18433954-18451969	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18430600-18446400	Weak transcription	Brain Angular Gyrus	brain
2	chr10:18431200-18447800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:18431200-18447800	Weak transcription	Fetal Intestine Large	intestine
4	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:18432600-18446800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:18432600-18448000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:18434200-18448000	Weak transcription	Pancreas	Pancrea
8	chr10:18435000-18454200	Weak transcription	Brain Anterior Caudate	brain
9	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:18436000-18448200	Weak transcription	Left Ventricle	heart
11	chr10:18440800-18446800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:18440800-18447000	Weak transcription	Fetal Brain Female	brain
13	chr10:18441200-18445800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:18441200-18446800	Weak transcription	Aorta	Aorta
15	chr10:18441600-18446400	Weak transcription	Fetal Brain Male	brain
16	chr10:18441600-18447800	Weak transcription	Fetal Stomach	stomach
17	chr10:18441600-18447800	Weak transcription	Ovary	ovary
18	chr10:18441800-18448200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:18443800-18459000	Weak transcription	Fetal Intestine Small	intestine
20	chr10:18444600-18447000	Weak transcription	Fetal Lung	lung
21	chr10:18444600-18447200	Weak transcription	Fetal Heart	heart
22	chr10:18444600-18447800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:18444600-18451200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:18444600-18456000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:18444600-18457000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:18444600-18458400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr10:18444600-18466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:18444800-18446000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:18444800-18451200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:18445400-18446200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:18445400-18446600	Enhancers	Hela-S3	cervix
32	chr10:18445400-18447600	Enhancers	Colon Smooth Muscle	Colon

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