Variant report

Variant	rs61842438
Chromosome Location	chr10:18439273-18439274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11012828	0.94[ASN][1000 genomes]
rs11012829	0.94[ASN][1000 genomes]
rs11012830	0.94[ASN][1000 genomes]
rs11012832	0.94[ASN][1000 genomes]
rs11012838	0.92[ASN][1000 genomes]
rs11012839	0.92[ASN][1000 genomes]
rs12247369	0.85[ASN][1000 genomes]
rs12572404	0.94[EUR][1000 genomes]
rs55822580	0.90[EUR][1000 genomes]
rs57831826	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58055243	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60689569	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60858250	0.95[EUR][1000 genomes]
rs61545603	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61842423	0.81[AMR][1000 genomes]
rs61842424	0.86[AMR][1000 genomes]
rs61842427	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61842428	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61842432	0.92[EUR][1000 genomes]
rs61842437	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61842440	0.90[AMR][1000 genomes]
rs74120238	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054616	chr10:18433954-18451969	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18430600-18446400	Weak transcription	Brain Angular Gyrus	brain
2	chr10:18430800-18442400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:18431000-18440600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18431200-18440600	Weak transcription	Aorta	Aorta
5	chr10:18431200-18447800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:18431200-18447800	Weak transcription	Fetal Intestine Large	intestine
7	chr10:18431400-18440600	Weak transcription	Ovary	ovary
8	chr10:18431400-18441200	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:18432400-18440000	Weak transcription	Fetal Brain Male	brain
11	chr10:18432600-18446800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:18432600-18448000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:18434200-18444000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:18434200-18448000	Weak transcription	Pancreas	Pancrea
15	chr10:18435000-18454200	Weak transcription	Brain Anterior Caudate	brain
16	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:18435200-18440200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:18435200-18444000	Weak transcription	Fetal Heart	heart
19	chr10:18435400-18440200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:18435400-18443800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:18436000-18440200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:18436000-18448200	Weak transcription	Left Ventricle	heart
23	chr10:18436600-18440200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:18437800-18440000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:18437800-18440600	Weak transcription	Fetal Stomach	stomach
26	chr10:18439200-18439600	Weak transcription	Colon Smooth Muscle	Colon
27	chr10:18439200-18440200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr10:18439200-18440400	Weak transcription	Fetal Lung	lung

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