Variant report

Variant	rs61842432
Chromosome Location	chr10:18425599-18425600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:18425598-18425648	Caco-2	colon:	n/a
2	chr10:18425598-18425648	A549	lung:	n/a
3	chr10:18425598-18425648	HEEpiC	esophagus:	n/a
4	chr10:18425598-18425648	NHDF-neo	bronchial:	n/a
5	chr10:18425598-18425648	HIPEpiC	eye:	n/a
6	chr10:18425598-18425648	SK-N-SH	brain:	n/a
7	chr10:18425598-18425648	ECC-1	luminal epithelium:	n/a
8	chr10:18425598-18425648	GM12892	blood:	n/a
9	chr10:18425598-18425648	HCT-116	colon:	n/a
10	chr10:18425598-18425648	BE2_C	brain:	n/a
11	chr10:18425598-18425648	AG04449	skin:	fetal
12	chr10:18425598-18425648	NHBE	bronchial:	n/a
13	chr10:18425598-18425648	HAEpiC	amniotic membrane:	n/a
14	chr10:18425598-18425648	HRCEpiC	kidney:	n/a
15	chr10:18425598-18425648	HCF	heart:	n/a
16	chr10:18425598-18425648	GM12891	blood:	n/a
17	chr10:18425598-18425648	NT2-D1	testis:	n/a
18	chr10:18425598-18425648	IMR90	lung:	fetal
19	chr10:18425598-18425648	H1-hESC	embryonic stem cell:	embryo
20	chr10:18425598-18425648	MCF-7	breast:	n/a
21	chr10:18425598-18425648	HPAEpiC	pulmonary alveolar:	n/a
22	chr10:18425598-18425648	K562	blood:	n/a
23	chr10:18425598-18425648	SAEC	small airway:	n/a
24	chr10:18425598-18425648	LNCaP	prostate:	n/a
25	chr10:18425598-18425648	RPTEC	kidney:	n/a
26	chr10:18425598-18425648	HRE	kidney:	n/a
27	chr10:18425598-18425648	HepG2	liver:	n/a
28	chr10:18425598-18425648	HCM	heart:	n/a
29	chr10:18425598-18425648	HRPEpiC	eye:	n/a
30	chr10:18425598-18425648	HCPEpiC	choroid plexus:	n/a
31	chr10:18425598-18425648	AoSMC	blood vessel:	n/a
32	chr10:18425598-18425648	CMK	blood:	n/a
33	chr10:18425598-18425648	HUVEC	blood vessel:	n/a
34	chr10:18425598-18425648	HEK293	kidney:	embryo
35	chr10:18425598-18425648	HNPCEpiC	eye:	n/a
36	chr10:18425598-18425648	MCF10A-Er-Src	breast:	n/a
37	chr10:18425598-18425648	HMEC	breast:	n/a
38	chr10:18425598-18425648	PANC-1	pancreas:	n/a
39	chr10:18425598-18425648	NH-A	brain:	n/a
40	chr10:18425598-18425648	SKMC	muscle:	n/a
41	chr10:18425598-18425648	U87	brain:	n/a
42	chr10:18425598-18425648	Jurkat	blood:	n/a
43	chr10:18425598-18425648	PFSK-1	brain:	n/a
44	chr10:18425598-18425648	T-47D	breast:	n/a
45	chr10:18425598-18425648	GM06990	blood:	n/a
46	chr10:18425598-18425648	SK-N-SH_RA	brain:	n/a
47	chr10:18425598-18425648	SK-N-MC	brain:	n/a
48	chr10:18425598-18425648	Hepatocyte	liver:	n/a
49	chr10:18425598-18425648	Hela-S3	cervix:	n/a
50	chr10:18425598-18425648	AG09309	skin:	n/a

No data

Variant related genes	Relation type
CACNB2	CpG island

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12572404	0.86[EUR][1000 genomes]
rs55822580	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57831826	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58055243	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60689569	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60858250	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61545603	0.92[EUR][1000 genomes]
rs61842427	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61842428	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61842434	0.98[ASN][1000 genomes]
rs61842437	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61842438	0.92[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18423800-18426400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:18424200-18428800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:18424800-18425600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr10:18424800-18425600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:18424800-18425600	Bivalent Enhancer	Brain Germinal Matrix	brain
6	chr10:18424800-18425800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:18425000-18425600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr10:18425000-18425600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:18425000-18425600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr10:18425000-18428600	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:18425000-18428600	Weak transcription	Fetal Heart	heart
12	chr10:18425200-18425600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:18425200-18425600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr10:18425200-18425600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr10:18425200-18425800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:18425200-18428600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:18425400-18425600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr10:18425400-18425600	Enhancers	Brain Anterior Caudate	brain
19	chr10:18425400-18425800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr10:18425400-18425800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr10:18425400-18425800	Enhancers	Brain Substantia Nigra	brain
22	chr10:18425400-18428400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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