Variant report

Variant	rs11012620
Chromosome Location	chr10:21551153-21551154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21461339..21463027-chr10:21550399..21552226,2	K562	blood:
2	chr10:21549133..21551540-chr10:21553150..21555361,2	MCF-7	breast:
3	chr10:21549541..21551561-chr10:21551946..21554447,2	K562	blood:

Variant related genes	Relation type
ENSG00000078114	Chromatin interaction
ENSG00000231920	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11012619	1.00[YRI][hapmap]
rs11012621	1.00[YRI][hapmap]
rs12245111	1.00[YRI][hapmap]
rs12267804	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21547400-21554600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:21548400-21551200	Enhancers	Fetal Lung	lung
3	chr10:21548600-21552200	Weak transcription	K562	blood
4	chr10:21549200-21552200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:21549200-21552400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:21549400-21552400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:21549800-21551800	Enhancers	Brain Germinal Matrix	brain
8	chr10:21550200-21551400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:21550200-21559800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:21550200-21560200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:21550400-21551200	Enhancers	Fetal Brain Female	brain
12	chr10:21550400-21551800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:21550400-21554200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:21550400-21556400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr10:21550400-21559800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:21550400-21560200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:21550600-21551400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:21550600-21551600	Enhancers	Fetal Brain Male	brain
19	chr10:21550800-21551200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:21550800-21551400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:21551000-21551200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr10:21551000-21551600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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