Variant report

Variant	rs12267804
Chromosome Location	chr10:21549527-21549528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21549133..21551540-chr10:21553150..21555361,2	MCF-7	breast:
2	chr10:21461521..21464243-chr10:21547978..21550972,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078114	Chromatin interaction
ENSG00000231920	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10128510	0.91[EUR][1000 genomes]
rs11012619	1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11012620	1.00[YRI][hapmap]
rs11012621	1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs12241138	1.00[EUR][1000 genomes]
rs12245111	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16921692	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4508101	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21522000-21549600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:21530600-21549600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:21543200-21550800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:21546000-21550000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:21547400-21554600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:21548400-21550000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:21548400-21550600	Enhancers	Ovary	ovary
8	chr10:21548400-21551200	Enhancers	Fetal Lung	lung
9	chr10:21548600-21552200	Weak transcription	K562	blood
10	chr10:21548800-21549600	Enhancers	Fetal Muscle Leg	muscle
11	chr10:21548800-21549800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:21549000-21549600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:21549000-21549800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:21549000-21550000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:21549000-21550200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:21549000-21550400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr10:21549200-21550000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:21549200-21552200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:21549200-21552400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:21549400-21550200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:21549400-21550400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:21549400-21550400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:21549400-21550600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:21549400-21550600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:21549400-21552400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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