Variant report

Variant	rs11012696
Chromosome Location	chr10:21715985-21715986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10082426	1.00[EUR][1000 genomes]
rs10466076	1.00[EUR][1000 genomes]
rs10466077	1.00[EUR][1000 genomes]
rs10466079	1.00[EUR][1000 genomes]
rs11012685	1.00[EUR][1000 genomes]
rs11012700	1.00[EUR][1000 genomes]
rs11012706	1.00[EUR][1000 genomes]
rs12247076	1.00[EUR][1000 genomes]
rs7071159	1.00[EUR][1000 genomes]
rs7093106	1.00[EUR][1000 genomes]
rs7915114	1.00[EUR][1000 genomes]
rs7916329	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21707200-21716600	Weak transcription	A549	lung
2	chr10:21707400-21716800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:21710600-21716600	Weak transcription	NHEK	skin
4	chr10:21711200-21717600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:21715600-21717400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:21715600-21719000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:21715800-21716000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr10:21715800-21716400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links