Variant report
| Variant | rs7915114 |
|---|---|
| Chromosome Location | chr10:21740640-21740641 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:21738096..21741227-chr10:21742837..21745484,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10047405 | 1.00[TSI][hapmap] |
| rs10082426 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10466076 | 1.00[EUR][1000 genomes] |
| rs10466077 | 1.00[EUR][1000 genomes] |
| rs10466079 | 1.00[EUR][1000 genomes] |
| rs11012685 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs11012696 | 1.00[EUR][1000 genomes] |
| rs11012700 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11012706 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11012731 | 1.00[TSI][hapmap] |
| rs12245121 | 1.00[TSI][hapmap] |
| rs12247076 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12249032 | 1.00[TSI][hapmap] |
| rs12260708 | 0.96[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs7071159 | 1.00[EUR][1000 genomes] |
| rs7076467 | 1.00[TSI][hapmap] |
| rs7083214 | 1.00[TSI][hapmap] |
| rs7093106 | 1.00[EUR][1000 genomes] |
| rs7916329 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv825284 | chr10:21739527-21847437 | Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 34 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:21738600-21762000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
