Variant report

Variant	rs11013295
Chromosome Location	chr10:23404754-23404755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23386053..23388317-chr10:23404216..23407147,2	K562	blood:
2	chr10:23402869..23404885-chr10:23406832..23409612,2	K562	blood:
3	chr10:23403385..23405094-chr10:23406832..23409596,2	K562	blood:

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11013289	0.83[CEU][hapmap]
rs11013292	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013294	0.91[CEU][hapmap]
rs12780893	0.87[CEU][hapmap]
rs17540863	0.91[CEU][hapmap]
rs1857279	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1977372	0.83[CEU][hapmap]
rs6482254	0.87[CEU][hapmap]
rs7904442	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23385800-23409400	Weak transcription	NH-A	brain
2	chr10:23386000-23412000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:23386400-23409600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:23386400-23411200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr10:23386400-23411200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:23386600-23407800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:23386600-23410600	Weak transcription	Fetal Thymus	thymus
8	chr10:23386600-23412200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr10:23387200-23411400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:23388800-23405200	Weak transcription	Psoas Muscle	Psoas
11	chr10:23389200-23407400	Weak transcription	Fetal Kidney	kidney
12	chr10:23389400-23410600	Weak transcription	Stomach Mucosa	stomach
13	chr10:23389600-23409000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:23389600-23418600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:23390000-23405600	Weak transcription	NHEK	skin
16	chr10:23390000-23408200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:23390000-23411800	Weak transcription	HUVEC	blood vessel
18	chr10:23390200-23409800	Weak transcription	Small Intestine	intestine
19	chr10:23392400-23410800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:23392800-23410800	Strong transcription	Primary T cells from cord blood	blood
21	chr10:23392800-23410800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:23393000-23405800	Strong transcription	Fetal Intestine Large	intestine
23	chr10:23393000-23410600	Strong transcription	Fetal Stomach	stomach
24	chr10:23393200-23405800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:23393200-23410800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:23393200-23410800	Strong transcription	Duodenum Mucosa	Duodenum
27	chr10:23393200-23411000	Strong transcription	Adipose Nuclei	Adipose
28	chr10:23393200-23411000	Strong transcription	Liver	Liver
29	chr10:23393600-23405600	Weak transcription	Fetal Heart	heart
30	chr10:23393600-23410800	Strong transcription	Fetal Muscle Leg	muscle
31	chr10:23393800-23410800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:23394000-23408000	Weak transcription	Esophagus	oesophagus
33	chr10:23394000-23408200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:23394400-23407600	Weak transcription	Dnd41	blood
35	chr10:23394600-23407400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:23395800-23414800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:23396000-23410600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:23396200-23407400	Weak transcription	Colonic Mucosa	Colon
39	chr10:23396200-23407400	Weak transcription	Thymus	Thymus
40	chr10:23396800-23407400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:23397600-23405800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:23397800-23406200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:23398800-23409800	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr10:23400400-23408800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:23400600-23409400	Weak transcription	HepG2	liver
46	chr10:23400600-23410600	Weak transcription	NHDF-Ad	bronchial
47	chr10:23401200-23405200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:23401200-23407600	Weak transcription	Right Ventricle	heart
49	chr10:23401600-23410800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:23402200-23413400	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links