Variant report

Variant	rs1857279
Chromosome Location	chr10:23398448-23398449
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23392239..23394396-chr10:23396645..23398938,2	K562	blood:

Variant related genes	Relation type
ENSG00000148450	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11013292	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11013295	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7904442	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23385800-23401800	Weak transcription	Brain Germinal Matrix	brain
2	chr10:23385800-23409400	Weak transcription	NH-A	brain
3	chr10:23386000-23412000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:23386400-23409600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:23386400-23411200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:23386400-23411200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:23386600-23400600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:23386600-23401800	Weak transcription	Fetal Brain Male	brain
9	chr10:23386600-23403600	Weak transcription	Fetal Brain Female	brain
10	chr10:23386600-23407800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:23386600-23410600	Weak transcription	Fetal Thymus	thymus
12	chr10:23386600-23412200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:23387200-23411400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:23388800-23405200	Weak transcription	Psoas Muscle	Psoas
15	chr10:23389200-23402200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:23389200-23407400	Weak transcription	Fetal Kidney	kidney
17	chr10:23389400-23401200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:23389400-23402000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:23389400-23410600	Weak transcription	Stomach Mucosa	stomach
20	chr10:23389600-23409000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr10:23389600-23418600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:23389800-23399200	Weak transcription	HepG2	liver
23	chr10:23389800-23403800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr10:23390000-23405600	Weak transcription	NHEK	skin
25	chr10:23390000-23408200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:23390000-23411800	Weak transcription	HUVEC	blood vessel
27	chr10:23390200-23409800	Weak transcription	Small Intestine	intestine
28	chr10:23392400-23404000	Weak transcription	Primary B cells from cord blood	blood
29	chr10:23392400-23410800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:23392800-23404200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:23392800-23410800	Strong transcription	Primary T cells from cord blood	blood
32	chr10:23392800-23410800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:23393000-23404200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:23393000-23404200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr10:23393000-23405800	Strong transcription	Fetal Intestine Large	intestine
36	chr10:23393000-23410600	Strong transcription	Fetal Stomach	stomach
37	chr10:23393200-23400600	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr10:23393200-23400800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:23393200-23400800	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:23393200-23401600	Strong transcription	Fetal Lung	lung
41	chr10:23393200-23402200	Strong transcription	Colon Smooth Muscle	Colon
42	chr10:23393200-23404000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr10:23393200-23404600	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:23393200-23405800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:23393200-23410800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:23393200-23410800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr10:23393200-23411000	Strong transcription	Adipose Nuclei	Adipose
48	chr10:23393200-23411000	Strong transcription	Liver	Liver
49	chr10:23393400-23404600	Strong transcription	Stomach Smooth Muscle	stomach
50	chr10:23393600-23403000	Strong transcription	Placenta	Placenta

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