Variant report

Variant	rs11013368
Chromosome Location	chr10:23582437-23582438
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11013353	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11013354	1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs11013365	1.00[CHB][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11013372	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11013399	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[MKK][hapmap];1.00[ASN][1000 genomes]
rs12221027	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7919339	1.00[CHB][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23580600-23590800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:23581200-23582600	Weak transcription	Fetal Brain Male	brain
3	chr10:23581800-23582600	Enhancers	Brain Anterior Caudate	brain
4	chr10:23581800-23582800	Enhancers	Brain Hippocampus Middle	brain
5	chr10:23581800-23583600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:23582000-23582600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:23582200-23583000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:23582200-23583400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:23582200-23583400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:23582400-23582600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:23582400-23582600	Enhancers	Brain Substantia Nigra	brain
12	chr10:23582400-23582800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr10:23582400-23582800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr10:23582400-23583200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:23582400-23583400	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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