Variant report
| Variant | rs11013354 |
|---|---|
| Chromosome Location | chr10:23544609-23544610 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:23542877..23545255-chr10:23545459..23547478,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000227537 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs11013353 | 1.00[CHB][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11013357 | 0.98[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs11013365 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11013368 | 1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs11013369 | 0.86[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs11013372 | 1.00[ASN][1000 genomes] |
| rs11013399 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs12221027 | 1.00[ASN][1000 genomes] |
| rs4587637 | 0.88[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs7919339 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831810 | chr10:23445647-23605270 | Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv466834 | chr10:23482635-23623523 | Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv550213 | chr10:23482635-23623523 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
