Variant report

Variant	rs4587637
Chromosome Location	chr10:23581806-23581807
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23446542..23448186-chr10:23581789..23584081,25	MCF-7	breast:
2	chr10:23446974..23447956-chr10:23581361..23582806,8	MCF-7	breast:
3	chr10:23449130..23449645-chr10:23581798..23582741,2	MCF-7	breast:
4	chr10:23447053..23448128-chr10:23581768..23582741,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10828425	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828427	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828431	0.82[JPT][hapmap]
rs11013353	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs11013354	0.88[YRI][hapmap];0.88[AFR][1000 genomes]
rs11013357	0.86[AFR][1000 genomes]
rs11013364	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs11013369	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013377	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013378	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013386	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013397	0.82[JPT][hapmap]
rs11813971	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12217944	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12569400	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12571348	0.97[EUR][1000 genomes]
rs3891382	0.86[JPT][hapmap]
rs4297364	0.88[YRI][hapmap]
rs4747460	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4747461	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4748853	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4748858	0.96[ASN][1000 genomes]
rs4748860	0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs4748861	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs72648296	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7904429	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7904551	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23573000-23582200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:23580600-23590800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:23580800-23582000	Weak transcription	Brain Substantia Nigra	brain
4	chr10:23580800-23582400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:23581000-23582200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:23581200-23582200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:23581200-23582600	Weak transcription	Fetal Brain Male	brain
8	chr10:23581800-23582200	Enhancers	Brain Angular Gyrus	brain
9	chr10:23581800-23582600	Enhancers	Brain Anterior Caudate	brain
10	chr10:23581800-23582800	Enhancers	Brain Hippocampus Middle	brain
11	chr10:23581800-23583600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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