Variant report

Variant	rs12571348
Chromosome Location	chr10:23549231-23549232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10764397	0.98[ASN][1000 genomes]
rs10828421	0.98[ASN][1000 genomes]
rs10828422	0.98[ASN][1000 genomes]
rs10828423	0.97[ASN][1000 genomes]
rs10828425	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10828427	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013356	0.98[ASN][1000 genomes]
rs11013364	0.94[ASN][1000 genomes]
rs11013369	0.97[EUR][1000 genomes]
rs11013377	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013378	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013386	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11813971	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12217944	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12246990	0.98[ASN][1000 genomes]
rs12569400	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1998769	0.91[AMR][1000 genomes]
rs3891382	0.98[ASN][1000 genomes]
rs4144623	0.92[ASN][1000 genomes]
rs4258280	0.98[ASN][1000 genomes]
rs4359107	0.98[ASN][1000 genomes]
rs4382803	0.98[ASN][1000 genomes]
rs4587637	0.97[EUR][1000 genomes]
rs4626975	0.98[ASN][1000 genomes]
rs4747460	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4747461	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4747463	0.88[AMR][1000 genomes]
rs4748844	0.81[ASN][1000 genomes]
rs4748850	0.98[ASN][1000 genomes]
rs4748853	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4748861	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59664099	0.88[AMR][1000 genomes]
rs72648296	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7904429	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7904551	0.89[EUR][1000 genomes]
rs7907909	0.98[ASN][1000 genomes]
rs7919530	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23547600-23550200	Weak transcription	Pancreas	Pancrea

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