Variant report

Variant	rs10828423
Chromosome Location	chr10:23568819-23568820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23562404..23564647-chr10:23567561..23570177,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10741026	0.83[AMR][1000 genomes]
rs10764397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10764398	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828415	0.91[AMR][1000 genomes]
rs10828419	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828421	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828425	0.81[ASN][1000 genomes]
rs10828427	0.80[ASN][1000 genomes]
rs10828430	0.87[AMR][1000 genomes]
rs10828431	0.87[AMR][1000 genomes]
rs11013356	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11013364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013376	0.88[AFR][1000 genomes]
rs11013377	0.81[ASN][1000 genomes]
rs11013378	0.81[ASN][1000 genomes]
rs11013386	0.82[ASN][1000 genomes]
rs11013397	0.87[AMR][1000 genomes]
rs11013404	0.87[AMR][1000 genomes]
rs11013412	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11813971	0.85[ASN][1000 genomes]
rs12217944	0.81[ASN][1000 genomes]
rs12246990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12248355	0.90[AFR][1000 genomes]
rs12266732	0.88[AFR][1000 genomes]
rs12569400	0.81[ASN][1000 genomes]
rs12571348	0.97[ASN][1000 genomes]
rs3891382	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4144623	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4258280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4359107	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4367853	0.85[AFR][1000 genomes]
rs4378291	0.92[AFR][1000 genomes]
rs4382803	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4433485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4454613	0.92[AFR][1000 genomes]
rs4528217	0.92[AFR][1000 genomes]
rs4626975	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747453	0.91[AMR][1000 genomes]
rs4747455	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4747461	0.82[ASN][1000 genomes]
rs4747466	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4748844	0.86[AMR][1000 genomes]
rs4748850	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4748853	0.81[ASN][1000 genomes]
rs4748866	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4748877	0.84[AMR][1000 genomes]
rs61629455	0.84[AMR][1000 genomes]
rs61710647	0.81[AFR][1000 genomes]
rs72648296	0.81[ASN][1000 genomes]
rs7907909	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919530	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7922989	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23568000-23569400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:23568200-23569200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:23568200-23569400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr10:23568400-23569200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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