Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10764398	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs10828419	0.81[AFR][1000 genomes]
rs10828422	0.88[AFR][1000 genomes]
rs10828423	0.88[AFR][1000 genomes]
rs11013364	0.88[YRI][hapmap];0.88[AFR][1000 genomes]
rs12246990	0.88[AFR][1000 genomes]
rs12248355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266732	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923159	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs3891382	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs4072688	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4258280	0.85[AFR][1000 genomes]
rs4359107	0.84[AFR][1000 genomes]
rs4378291	0.80[AFR][1000 genomes]
rs4433485	0.88[AFR][1000 genomes]
rs4454613	0.88[YRI][hapmap];0.80[AFR][1000 genomes]
rs4528217	0.80[AFR][1000 genomes]
rs4747455	0.84[YRI][hapmap]
rs4748850	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs56268420	0.93[AMR][1000 genomes]
rs60500160	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61710647	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907909	0.88[AFR][1000 genomes]
rs9665636	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23593200-23599400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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