Variant report

Variant	rs4747455
Chromosome Location	chr10:23570430-23570431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10741026	0.83[AMR][1000 genomes]
rs10764397	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10764398	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828415	0.91[AMR][1000 genomes]
rs10828419	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828421	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10828422	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10828423	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10828426	0.81[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs10828430	0.87[AMR][1000 genomes]
rs10828431	0.87[AMR][1000 genomes]
rs11013356	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11013364	0.82[CHB][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11013376	0.84[YRI][hapmap]
rs11013397	0.87[AMR][1000 genomes]
rs11013404	0.87[AMR][1000 genomes]
rs11013412	0.84[AMR][1000 genomes]
rs12246990	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12266732	0.87[YRI][hapmap]
rs12413144	0.94[ASN][1000 genomes]
rs1319250	0.88[ASN][1000 genomes]
rs3891382	0.96[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4144623	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4258280	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4359107	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4367853	0.80[AFR][1000 genomes]
rs4382803	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4433485	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4453119	0.91[ASN][1000 genomes]
rs4454613	0.83[CHB][hapmap];0.96[YRI][hapmap]
rs4603206	0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4626975	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4633356	0.89[ASN][1000 genomes]
rs4747453	0.91[AMR][1000 genomes]
rs4747456	0.95[ASN][1000 genomes]
rs4747458	0.92[ASN][1000 genomes]
rs4747462	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4747466	0.84[AMR][1000 genomes]
rs4748844	0.86[AMR][1000 genomes]
rs4748848	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4748850	0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4748851	0.81[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs4748854	0.81[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs4748855	0.93[ASN][1000 genomes]
rs4748856	0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4748857	0.81[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4748866	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4748877	0.84[AMR][1000 genomes]
rs61629455	0.84[AMR][1000 genomes]
rs6482261	0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6482263	0.90[ASN][1000 genomes]
rs7071705	0.88[ASN][1000 genomes]
rs7075197	0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs7082900	0.81[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs7089898	0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs7095016	0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7907909	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7919530	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7922989	0.80[AFR][1000 genomes]
rs9888000	0.94[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23569600-23572600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:23570200-23570800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:23570400-23571000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:23570400-23571000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:23570400-23571000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:23570400-23572400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links