Variant report

Variant	rs10828430
Chromosome Location	chr10:23617580-23617581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23616493..23618340-chr10:23698443..23701341,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10741026	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764397	0.87[AMR][1000 genomes]
rs10764398	0.87[AMR][1000 genomes]
rs10828415	0.82[AMR][1000 genomes]
rs10828419	0.85[AMR][1000 genomes]
rs10828421	0.89[AMR][1000 genomes]
rs10828422	0.87[AMR][1000 genomes]
rs10828423	0.87[AMR][1000 genomes]
rs10828431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013356	0.89[AMR][1000 genomes]
rs11013364	0.87[AMR][1000 genomes]
rs11013397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013404	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013412	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12246990	0.87[AMR][1000 genomes]
rs3891382	0.85[AMR][1000 genomes]
rs4144623	0.89[AMR][1000 genomes]
rs4258280	0.87[AMR][1000 genomes]
rs4359107	0.87[AMR][1000 genomes]
rs4382803	0.87[AMR][1000 genomes]
rs4433485	0.87[AMR][1000 genomes]
rs4626975	0.89[AMR][1000 genomes]
rs4747453	0.82[AMR][1000 genomes]
rs4747455	0.87[AMR][1000 genomes]
rs4747463	0.96[ASN][1000 genomes]
rs4747466	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4748850	0.83[AMR][1000 genomes]
rs4748861	0.83[ASN][1000 genomes]
rs4748866	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748877	0.80[AMR][1000 genomes]
rs59664099	0.96[ASN][1000 genomes]
rs61629455	0.80[AMR][1000 genomes]
rs7907909	0.87[AMR][1000 genomes]
rs7919530	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23599800-23632200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:23606400-23620600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:23615800-23620600	Weak transcription	Hela-S3	cervix

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