Variant report

Variant	rs4747453
Chromosome Location	chr10:23484478-23484479
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10764397	0.91[AMR][1000 genomes]
rs10764398	0.91[AMR][1000 genomes]
rs10828415	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828419	0.89[AMR][1000 genomes]
rs10828421	0.93[AMR][1000 genomes]
rs10828422	0.91[AMR][1000 genomes]
rs10828423	0.91[AMR][1000 genomes]
rs10828430	0.82[AMR][1000 genomes]
rs10828431	0.82[AMR][1000 genomes]
rs11013356	0.93[AMR][1000 genomes]
rs11013364	0.91[AMR][1000 genomes]
rs11013397	0.82[AMR][1000 genomes]
rs11013404	0.82[AMR][1000 genomes]
rs12246990	0.91[AMR][1000 genomes]
rs1998769	0.87[ASN][1000 genomes]
rs3891382	0.89[AMR][1000 genomes]
rs4144623	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4258280	0.91[AMR][1000 genomes]
rs4359107	0.91[AMR][1000 genomes]
rs4382803	0.91[AMR][1000 genomes]
rs4433485	0.91[AMR][1000 genomes]
rs4626975	0.93[AMR][1000 genomes]
rs4747455	0.91[AMR][1000 genomes]
rs4748844	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4748850	0.87[AMR][1000 genomes]
rs4748866	0.84[AMR][1000 genomes]
rs7907909	0.91[AMR][1000 genomes]
rs7919530	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825301	chr10:23440604-23505846	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825302	chr10:23457022-23497329	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754706	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2756096	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv430137	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23483600-23484600	Bivalent Enhancer	Fetal Brain Male	brain
2	chr10:23483600-23484800	Bivalent Enhancer	Brain Substantia Nigra	brain
3	chr10:23483600-23485200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
4	chr10:23483800-23484600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:23483800-23484600	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
6	chr10:23483800-23484600	Bivalent Enhancer	Fetal Stomach	stomach
7	chr10:23484000-23484800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
8	chr10:23484000-23484800	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
9	chr10:23484200-23484600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:23484200-23485200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:23484200-23486200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:23484200-23486600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:23484400-23484600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr10:23484400-23484600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:23484400-23484600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
16	chr10:23484400-23484600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
17	chr10:23484400-23484800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
18	chr10:23484400-23484800	Bivalent Enhancer	Fetal Brain Female	brain
19	chr10:23484400-23485000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
20	chr10:23484400-23485000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:23484400-23486800	Enhancers	Pancreas	Pancrea

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