Variant report

Variant	rs1998769
Chromosome Location	chr10:23483630-23483631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10828415	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10828425	0.88[AMR][1000 genomes]
rs11013369	0.82[JPT][hapmap]
rs11013377	0.88[AMR][1000 genomes]
rs11013378	0.88[AMR][1000 genomes]
rs11813971	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12217944	0.88[AMR][1000 genomes]
rs12571348	0.91[AMR][1000 genomes]
rs4747453	0.87[ASN][1000 genomes]
rs4747460	0.83[CHB][hapmap]
rs4747461	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs4748844	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs4748853	0.88[AMR][1000 genomes]
rs4748861	0.88[AMR][1000 genomes]
rs72648296	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825301	chr10:23440604-23505846	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825302	chr10:23457022-23497329	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754706	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2756096	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv430137	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3374760	chr10:23480971-23483819	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23480200-23484400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:23482200-23484000	Weak transcription	Gastric	stomach
3	chr10:23483400-23483800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:23483400-23484400	Flanking Active TSS	Pancreas	Pancrea
5	chr10:23483600-23483800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr10:23483600-23483800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:23483600-23483800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:23483600-23483800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:23483600-23483800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:23483600-23483800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:23483600-23484000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:23483600-23484200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr10:23483600-23484200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr10:23483600-23484200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
15	chr10:23483600-23484400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr10:23483600-23484400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:23483600-23484400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr10:23483600-23484400	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr10:23483600-23484400	Bivalent Enhancer	Left Ventricle	heart
20	chr10:23483600-23484600	Bivalent Enhancer	Fetal Brain Male	brain
21	chr10:23483600-23484800	Bivalent Enhancer	Brain Substantia Nigra	brain
22	chr10:23483600-23485200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links