Variant report

Variant	rs11813971
Chromosome Location	chr10:23555743-23555744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10764397	0.87[ASN][1000 genomes]
rs10828421	0.87[ASN][1000 genomes]
rs10828422	0.87[ASN][1000 genomes]
rs10828423	0.85[ASN][1000 genomes]
rs10828425	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828427	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828431	0.86[JPT][hapmap]
rs11013356	0.86[ASN][1000 genomes]
rs11013364	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs11013369	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013377	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013378	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013386	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11013397	0.86[JPT][hapmap]
rs12217944	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12246990	0.87[ASN][1000 genomes]
rs12569400	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12571348	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1998769	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3891382	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs4144623	0.81[ASN][1000 genomes]
rs4258280	0.87[ASN][1000 genomes]
rs4359107	0.87[ASN][1000 genomes]
rs4382803	0.87[ASN][1000 genomes]
rs4587637	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4626975	0.87[ASN][1000 genomes]
rs4747460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4747463	0.86[AMR][1000 genomes]
rs4748850	0.87[ASN][1000 genomes]
rs4748853	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748858	0.89[ASN][1000 genomes]
rs4748860	0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs4748861	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59664099	0.86[AMR][1000 genomes]
rs72648296	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7904429	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7904551	0.92[EUR][1000 genomes]
rs7907909	0.87[ASN][1000 genomes]
rs7919530	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23555600-23564200	Weak transcription	Pancreas	Pancrea

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