Variant report

Variant	rs4748858
Chromosome Location	chr10:23599920-23599921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10828425	0.94[ASN][1000 genomes]
rs10828426	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10828427	0.93[ASN][1000 genomes]
rs11013369	0.97[ASN][1000 genomes]
rs11013377	0.94[ASN][1000 genomes]
rs11013378	0.94[ASN][1000 genomes]
rs11013386	0.95[ASN][1000 genomes]
rs11813971	0.89[ASN][1000 genomes]
rs12217944	0.94[ASN][1000 genomes]
rs12413144	0.81[AMR][1000 genomes]
rs12569400	0.94[ASN][1000 genomes]
rs1319250	0.83[EUR][1000 genomes]
rs4453119	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4587637	0.96[ASN][1000 genomes]
rs4603206	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4633356	0.83[EUR][1000 genomes]
rs4747456	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4747458	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4747460	0.92[ASN][1000 genomes]
rs4747461	0.95[ASN][1000 genomes]
rs4747462	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4748851	0.82[EUR][1000 genomes]
rs4748853	0.94[ASN][1000 genomes]
rs4748854	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4748855	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4748856	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4748857	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4748860	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482260	0.83[EUR][1000 genomes]
rs6482261	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6482263	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7071705	0.82[EUR][1000 genomes]
rs7075197	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7082900	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7089898	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7095016	0.84[AMR][1000 genomes]
rs72648296	0.94[ASN][1000 genomes]
rs7904429	0.97[ASN][1000 genomes]
rs9888000	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23598600-23600000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:23598600-23600000	Enhancers	Ovary	ovary
3	chr10:23598800-23600400	Enhancers	Fetal Heart	heart
4	chr10:23599200-23600200	Enhancers	HSMMtube	muscle
5	chr10:23599200-23600400	Enhancers	Fetal Lung	lung
6	chr10:23599400-23600000	Enhancers	Left Ventricle	heart
7	chr10:23599600-23600000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:23599600-23600000	Enhancers	Lung	lung
9	chr10:23599600-23605000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:23599800-23600200	Flanking Active TSS	Hela-S3	cervix
11	chr10:23599800-23632200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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