Variant report

Variant	rs11013397
Chromosome Location	chr10:23620809-23620810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10741026	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764397	0.87[AMR][1000 genomes]
rs10764398	0.82[CEU][hapmap];0.93[MEX][hapmap];0.87[AMR][1000 genomes]
rs10828415	0.87[MEX][hapmap];0.82[AMR][1000 genomes]
rs10828419	0.85[AMR][1000 genomes]
rs10828421	0.89[AMR][1000 genomes]
rs10828422	0.87[AMR][1000 genomes]
rs10828423	0.87[AMR][1000 genomes]
rs10828425	0.82[JPT][hapmap]
rs10828430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828431	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013356	0.89[AMR][1000 genomes]
rs11013364	0.82[CEU][hapmap];0.87[AMR][1000 genomes]
rs11013369	0.85[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap]
rs11013378	0.82[JPT][hapmap]
rs11013404	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11013412	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12217944	0.82[JPT][hapmap]
rs12246990	0.87[AMR][1000 genomes]
rs12569400	0.82[JPT][hapmap]
rs3891382	0.85[AMR][1000 genomes]
rs4144623	0.89[AMR][1000 genomes]
rs4258280	0.87[AMR][1000 genomes]
rs4359107	0.87[AMR][1000 genomes]
rs4382803	0.87[AMR][1000 genomes]
rs4433485	0.87[AMR][1000 genomes]
rs4587637	0.82[JPT][hapmap]
rs4626975	0.89[AMR][1000 genomes]
rs4747453	0.82[AMR][1000 genomes]
rs4747455	0.87[AMR][1000 genomes]
rs4747460	0.81[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap]
rs4747461	0.83[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap]
rs4747463	0.98[ASN][1000 genomes]
rs4747466	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4748844	0.93[MEX][hapmap]
rs4748850	0.83[AMR][1000 genomes]
rs4748861	0.85[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.82[ASN][1000 genomes]
rs4748866	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4748877	0.80[AMR][1000 genomes]
rs59664099	0.98[ASN][1000 genomes]
rs61629455	0.80[AMR][1000 genomes]
rs7907909	0.87[AMR][1000 genomes]
rs7919530	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23599800-23632200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:23619600-23631600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:23620600-23621400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr10:23620600-23621600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:23620600-23621600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:23620600-23621600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:23620600-23621600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:23620600-23621600	Enhancers	HMEC	breast
9	chr10:23620600-23621600	Enhancers	NH-A	brain
10	chr10:23620600-23622200	Enhancers	NHEK	skin
11	chr10:23620600-23622400	Enhancers	Hela-S3	cervix
12	chr10:23620800-23621600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:23620800-23629400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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