Variant report

Variant	rs4748877
Chromosome Location	chr10:23654467-23654468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10764397	0.84[AMR][1000 genomes]
rs10764398	0.84[AMR][1000 genomes]
rs10828419	0.82[AMR][1000 genomes]
rs10828421	0.86[AMR][1000 genomes]
rs10828422	0.84[AMR][1000 genomes]
rs10828423	0.84[AMR][1000 genomes]
rs10828430	0.80[AMR][1000 genomes]
rs10828431	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs11013356	0.86[AMR][1000 genomes]
rs11013364	0.84[AMR][1000 genomes]
rs11013397	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs11013404	0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11013412	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12246990	0.84[AMR][1000 genomes]
rs3891382	0.82[AMR][1000 genomes]
rs4144623	0.86[AMR][1000 genomes]
rs4258280	0.84[AMR][1000 genomes]
rs4359107	0.84[AMR][1000 genomes]
rs4382803	0.84[AMR][1000 genomes]
rs4433485	0.84[AMR][1000 genomes]
rs4626975	0.86[AMR][1000 genomes]
rs4747455	0.84[AMR][1000 genomes]
rs4747466	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4748850	0.80[AMR][1000 genomes]
rs4748861	0.85[CHB][hapmap]
rs4748866	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61629455	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7907909	0.84[AMR][1000 genomes]
rs7919530	0.86[AMR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23650600-23657600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:23653000-23655400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr10:23653000-23655800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr10:23653000-23656000	Weak transcription	Primary B cells from cord blood	blood
5	chr10:23653200-23657200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr10:23653400-23654800	Enhancers	GM12878-XiMat	blood
7	chr10:23653400-23655000	Enhancers	NHEK	skin
8	chr10:23653600-23655000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:23653600-23655200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:23653600-23655400	Enhancers	HMEC	breast
11	chr10:23653800-23656800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:23653800-23657200	Weak transcription	Fetal Thymus	thymus
13	chr10:23653800-23657600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:23654000-23655000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr10:23654000-23655600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:23654000-23655600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:23654000-23656200	Weak transcription	Primary T cells from cord blood	blood
18	chr10:23654200-23654600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr10:23654200-23656400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:23654400-23654800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:23654400-23655600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:23654400-23657200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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